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The 2022 Galaxy Community Conference (GCC2022) brings together hundreds of researchers, trainers, tool developers, software engineers, and  computational infrastructure providers, all addressing common challenges in data intensive science using the Galaxy data integration and analysis platform.

  • July 17-23, 2022
  • University of Minnesota, Twin Cities
  • Minneapolis, Minnesota, United States

This annual gathering of the Galaxy community includes training, talks, posters, demos, Birds of a Feather meetups, and many other opportunities for collaboration and networking. GCC2022 will be an in-person meeting with limited support for remote attendees. There is no better event than GCC2022 to share your work and learn form others working in data-intensive science.

Click HERE to Register!
avatar for Arthur Eschenlauer

Arthur Eschenlauer

University of Minnesota
Researcher 5
Twin Cities, MN
Contact Me
LinkedIn on LinkedIn
https://experts.umn.edu/en/persons/art-eschenlauer
https://orcid.org/0000-0002-2882-0508

Art has a Ph.D. in Biochemistry and twenty years experience in the business community supporting Windows and Linux systems and software. Since his return to academia, Art has created tools and developed workflows for proteomic and metabolomic analysis of LC-MS data in Galaxy.


Sunday, July 17
 

8:45am CDT

GCC2022 Opening and Welcome Salon ABCD RoomTimothy J. Griffin • James Wilgenbusch

9:00am CDT

Session 1: GCC2022 Opening & Keynote Presentation: Open Health Natural Language Processing (OHNLP) Collaborative - An open science journey towards real-world implementation of clinical NLP Salon ABCD RoomEnis Afgan • Hongfang Liu

10:20am CDT

10. Galaxy in AnVIL for Education Salon ABCD RoomNatalie Kucher 11. Automating Galaxy Tool Benchmarks Salon ABCD RoomKeith Suderman 14. Galaxy workflows to BioCompute Objects Salon ABCD RoomCharles [Hadley] King 2. A unified computing environment for genomics data storage, management, and analysis: NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-Space (AnVIL) Salon ABCD RoomStephen Mosher 3. AlphaFold on Galaxy: fast and accurate modelling of protein structures Salon ABCD RoomCameron Hyde 4. An integrated Galaxy-driven workflow for host-microbiota proteomics and targeted assay development to study host-microbe dynamics in clinical cystic fibrosis samples Salon ABCD RoomTimothy J. Griffin 41. Selenium based performance monitoring and load testing for Galaxy servers Salon ABCD RoomSimon Gladman 6. CGH and transcryptome analysis reveals genes related to survival in acute lymphoblastic leukemia Salon ABCD RoomJessica Alejandra Zapata García 8. Find and share Galaxy workflows with the community using Dockstore.org Salon ABCD RoomAvani Khadilkar

11:20am CDT

Galaxy as a (Science) Gateway to the Command Line Salon ABCD RoomCarrie Ganote

11:27am CDT

Decentralized Remote Data Handling in Galaxy Salon ABCD RoomJohn Chilton

11:42am CDT

GA4GH Task Execution Schema Support in Galaxy Salon ABCD RoomKyle Ellrott

11:49am CDT

Galaxy Storage Dashboard Salon ABCD RoomDannon Baker

11:56am CDT

Galaxy History Scaling and Modernization Salon ABCD RoomAysam Guerler

12:11pm CDT

Automating Galaxy Tool Benchmarks Salon ABCD RoomKeith Suderman

1:20pm CDT

Pandemic Research via Proteomics Gallery RoomTimothy J. Griffin • Pratik Jagtap • Subina Mehta • Andrew T. Rajczewski

4:10pm CDT

Sponsor Talk : Google Cloud Salon ABCD Room

4:30pm CDT

Continuous Testing Of Containerized Galaxy Tools Salon ABCD RoomAlex Ostrovsky

4:37pm CDT

The Observable Galaxy - a New Notebook Integration with Application to Regulatory Grade Database Construction Salon ABCD RoomStephen D. Shank

4:52pm CDT

Let the Analysis be GiN: Galaxy in Notebooks Salon ABCD RoomJayadev Joshi

4:59pm CDT

Galaxy ProTo 2.0 Redux: Dynamic Tool Prototyping Using Interactive Tools Salon ABCD RoomSveinung Gundersen

6:30pm CDT

Opening Night Reception Courtyard
 
Monday, July 18
 

9:00am CDT

Automated Reference Genome Assembly in Galaxy in Collaboration with the Vertebrate Genome Project Salon ABCD RoomDelphine Lariviere

9:15am CDT

An Integrated Galaxy-Driven Workflow for Host-Microbiota Proteomics and Targeted Assay Development to Study Host-Microbe Dynamics in Clinical Cystic Fibrosis Samples Salon ABCD RoomTimothy J. Griffin

9:22am CDT

Advances in Machine Learning for Galaxy Salon ABCD RoomJeremy Goecks

9:37am CDT

"Bottom-up Against F/Re”: Comparing Bottom-up Proteomics and a Modified Edman Degradation Methodology for Automated, Untargeted Protein Adductomics Analysis Within the Galaxy Platform Salon ABCD RoomAndrew T. Rajczewski

9:44am CDT

Omicron, Delta Waves and Beyond: Galaxy-Generated Variant-Specific Peptide Panels for Diagnosis, Characterization and Surveillance of Emerging Sars-Cov-2 Variants Salon ABCD RoomSubina Mehta

10:20am CDT

16. Galaxy Pipeline for Quantitative Analysis of Enriched Phosphopeptides Salon ABCD RoomArthur Eschenlauer 25. RNA Deconvolution with MuSiC Salon ABCD RoomMehmet Tekman 43. gxtk: Tool panel in your terminal Salon ABCD RoomCatherine Bromhead

11:20am CDT

Secure Deployment and Hosting of Galaxy Workflow Using Container Orchestration Tools and Infrastructure as Code Salon ABCD RoomSoyean Kim

11:27am CDT

Scaling Galaxy on the Cloud - Data-Local Cancer Analytics on AWS Salon ABCD RoomLuke Sargent

11:42am CDT

Open Bio Reference Data Catalog for Galaxy and Bioconductor Salon ABCD RoomEnis Afgan

11:49am CDT

Gravity: Painless Process Management for Galaxy Servers Salon ABCD RoomNate Coraor

11:56am CDT

Metascheduling Galaxy Jobs with Total Perspective Vortex Salon ABCD RoomNuwan Goonasekera • Catherine Bromhead

12:11pm CDT

FragPipe in Galaxy: Wrapper Implementation for a Complete Proteomics Tool Suite Salon ABCD RoomReid Wagner

1:20pm CDT

Conda, containers Salon ABCD RoomBjorn Gruning Contributing to GTN Discovery RoomSimon Gladman

4:10pm CDT

Sponsor Talk : Amazon Salon ABCD Room

4:45pm CDT

Community Update from PIs Salon ABCD RoomBjorn Gruning • Enis Afgan • Jeremy Goecks • Mike Schatz • Anton Nekrutenko • Daniel Blankenberg
 
Tuesday, July 19
 

9:00am CDT

From Newcomer to Contributor: a New Developer Experience with Galaxy Salon ABCD RoomTyler Collins • Ahmed Awan • Michelle Savage

9:07am CDT

Galaxy Australia: an Evolving Scientific Instrument Salon ABCD RoomGareth Price

9:22am CDT

Using Galaxy as a Teaching Platform for the YES for CURE Data Science Track Salon ABCD RoomAlexandru Mahmoud

9:29am CDT

Galaxy in AnVIL for Education Salon ABCD RoomNatalie Kucher

9:36am CDT

To Seek Out New Talent and New Perspectives: Promoting Functional Analysis of Microbiome Through Online Educational Resources via the Galaxy Platform Salon ABCD RoomPratik Jagtap

9:51am CDT

Galaxy-E: Ecology Oriented Galaxy Initiative, a 2022 Update! Salon ABCD RoomYvan Le Bras

10:20am CDT

11. Automating Galaxy Tool Benchmarks Salon ABCD RoomKeith Suderman 14. Galaxy workflows to BioCompute Objects Salon ABCD RoomCharles [Hadley] King 27. Bioconductor Interactive Tools in Galaxy Salon ABCD RoomAlexandru Mahmoud 28. FragPipe in Galaxy: Wrapper Implementation for a Complete Proteomics Tool Suite Salon ABCD RoomReid Wagner 29. What's new in Galaxy's API Salon ABCD RoomMarius van den Beek 31. Galaxy History Scaling and Modernization Salon ABCD RoomDannon Baker 32. Gravity: Painless Process Management for Galaxy Servers Salon ABCD RoomNate Coraor

11:27am CDT

Support for the Common Workflow Language in Galaxy: History, Progress and Remaining Challenges Salon ABCD RoomMichael R. Crusoe • Nicola Soranzo

11:42am CDT

Accelerating Galaxy with Task Queues Salon ABCD RoomJohn Chilton

11:49am CDT

Securely Storing Sensitive User Preferences in Galaxy Salon ABCD RoomNuwan Goonasekera

11:56am CDT

Galaxy’s New Database Migration System and Data Model Testing Infrastructure Salon ABCD RoomJohn Davis

12:11pm CDT

Robust, Performant and Resumable Uploads Using tus.io Salon ABCD RoomMarius van den Beek

1:20pm CDT

BioBlend Discovery RoomDannon Baker • Nicola Soranzo

4:10pm CDT

Sponsor Talk : PeerJ Salon ABCD Room

4:30pm CDT

Automatic Updates of Intergalactic Workflow Commission (IWC) Workflows Salon ABCD RoomMarius van den Beek

4:37pm CDT

FragPipe in Headless Mode Enables Seamlessly Analyzing LC-Ms Data in Galaxy Platform Salon ABCD RoomFengchao Yu

4:52pm CDT

MSMetaEnhancer: A Galaxy Tool for Mass Spectra Metadata Annotation Salon ABCD RoomMatej Troják

4:59pm CDT

NCBI Datasets, a New Resource for Accessing NCBI Genome Data in Galaxy Salon ABCD RoomNuala O'Leary

5:06pm CDT

RNA Deconvolution with MuSiC Salon ABCD RoomMehmet Tekman

5:20pm CDT

BOF: At the edge of the Galaxy, the lonely life of a (small scale) local Galaxy server admin Gallery RoomHans-Rudolf Hotz • Nicola Soranzo • Lucille Delisle
 
Wednesday, July 20
 

9:00am CDT

Visualization of Phylogenomic Data in Galaxy with CloudForest Salon ABCD RoomReid Wagner

9:07am CDT

A Galaxy Platform for Multiplex Tissue Imaging Analysis in Cancer Research and Translation Salon ABCD RoomCameron Watson

9:22am CDT

Processing of Small Molecule Gas Chromatography-Mass Spectrometry Data in Galaxy Salon ABCD RoomHelge Hecht

9:29am CDT

Building the Galaxy based X-Ray Imaging of Microstructures Gateway (XIMG) for High Energy X-Ray Diffraction, Imaging, and Microstructure Modeling Salon ABCD RoomKelly E Nygren

9:36am CDT

Targeting Viral Helicases Through Atomistic Molecular Dynamics Simulations in Galaxy Salon ABCD RoomBryan Raubenolt

9:51am CDT

Microbial Strain Characterization and Subtyping of Metagenome-Assembled Genomes With Sequence Bloom Trees in Galaxy Salon ABCD RoomFabio Cumbo

10:20am CDT

24. NCBI Datasets, a new resource for accessing NCBI genome data in Galaxy Salon ABCD RoomNuala O'Leary 33. MSMetaEnhancer: A Galaxy tool for mass spectra metadata annotation Salon ABCD RoomMatej Troják 34. Processing of small molecule gas chromatography-mass spectrometry data in Galaxy Salon ABCD RoomHelge Hecht 36. The Observable Galaxy: a new notebook integration with applications to regulatory grade database construction Salon ABCD RoomStephen D. Shank 38. FragPipe in headless mode enables seamlessly analyzing LC-MS data in Galaxy platform Salon ABCD RoomFengchao Yu

11:19am CDT

Session 21: Keynote Presentation: Comprehensive Rib Fracture Care Map delivered as a Clinical Decision System Salon ABCD RoomSubina Mehta • Chris Tignanelli

1:20pm CDT

Visualization Development in Galaxy Gallery RoomDannon Baker • Aysam Guerler

4:09pm CDT

Session 23: GCC2022 Closing Salon ABCD RoomTimothy J. Griffin • Pratik Jagtap

5:00pm CDT

BOF: International Galaxy Proteomics Meeting Strategy RoomTimothy J. Griffin • Pratik Jagtap
 
Thursday, July 21
 

9:00am CDT

CollaborationFest (CoFest) Day 1 Walter LibraryDannon Baker • Assunta DeSanto • James Johnson (JJ)
 
Friday, July 22
 

9:00am CDT

CollaborationFest (CoFest) Day 2 Walter LibraryDannon Baker • Assunta DeSanto • James Johnson (JJ)
 
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