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The 2022 Galaxy Community Conference (GCC2022) brings together hundreds of researchers, trainers, tool developers, software engineers, and  computational infrastructure providers, all addressing common challenges in data intensive science using the Galaxy data integration and analysis platform.

  • July 17-23, 2022
  • University of Minnesota, Twin Cities
  • Minneapolis, Minnesota, United States

This annual gathering of the Galaxy community includes training, talks, posters, demos, Birds of a Feather meetups, and many other opportunities for collaboration and networking. GCC2022 will be an in-person meeting with limited support for remote attendees. There is no better event than GCC2022 to share your work and learn form others working in data-intensive science.

Click HERE to Register!
avatar for Fabio Cumbo

Fabio Cumbo

Cleveland Clinic
Postdoctoral Researcher
Cleveland, OH
Websitehttps://cumbof.github.io
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Hi! I'm Fabio, a Software Engineer with a PhD in Computer Science and Automation Engineering, currently Postdoctoral Researcher at the Blankenberg Lab, Genomic Medicine Institute, Lerner Research Institute of the Cleveland Clinic, Cleveland, Ohio, USA.

I joined the Blankenberg Lab on March 2022, mainly working on new computational methods for studying the hidden diversity of the microbial dark matter and its relation to host health and environmental factors.

Have a look at my professional profile, including academic path and achievements, on my personal web space at https://cumbof.github.io
Sunday, July 17
 

7:59am CDT

Conference Day 1 Courtyard Minneapolis Downtown

8:00am CDT

Conference Desk Open Lobby

8:45am CDT

GCC2022 Opening and Welcome Salon ABCD RoomTimothy J. Griffin • James Wilgenbusch

9:00am CDT

Session 1: GCC2022 Opening & Keynote Presentation: Open Health Natural Language Processing (OHNLP) Collaborative - An open science journey towards real-world implementation of clinical NLP Salon ABCD RoomEnis Afgan • Hongfang Liu

10:19am CDT

Session 2: Poster / Demo Session A Salon ABCD Room

10:20am CDT

10. Galaxy in AnVIL for Education Salon ABCD RoomNatalie Kucher 11. Automating Galaxy Tool Benchmarks Salon ABCD RoomKeith Suderman 12. From Newcomer to Contributor: a New Developer Experience with Galaxy Salon ABCD RoomTyler Collins • Ahmed Awan • Michelle Savage 2. A unified computing environment for genomics data storage, management, and analysis: NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-Space (AnVIL) Salon ABCD RoomStephen Mosher 3. AlphaFold on Galaxy: fast and accurate modelling of protein structures Salon ABCD RoomCameron Hyde 4. An integrated Galaxy-driven workflow for host-microbiota proteomics and targeted assay development to study host-microbe dynamics in clinical cystic fibrosis samples Salon ABCD RoomTimothy J. Griffin 5. Automated Reference Genome Assembly in Galaxy in Collaboration with the Vertebrate Genome Project Salon ABCD RoomAlex Ostrovsky • Delphine Lariviere 8. Find and share Galaxy workflows with the community using Dockstore.org Salon ABCD RoomAvani Khadilkar

11:20am CDT

Galaxy as a (Science) Gateway to the Command Line Salon ABCD RoomCarrie Ganote

11:27am CDT

Decentralized Remote Data Handling in Galaxy Salon ABCD RoomJohn Chilton

1:20pm CDT

Pandemic Research via Proteomics Gallery RoomTimothy J. Griffin • Pratik Jagtap • Subina Mehta • Andrew T. Rajczewski

4:37pm CDT

The Observable Galaxy - a New Notebook Integration with Application to Regulatory Grade Database Construction Salon ABCD RoomStephen D. Shank

4:52pm CDT

Let the Analysis be GiN: Galaxy in Notebooks Salon ABCD RoomJayadev Joshi

4:59pm CDT

Galaxy ProTo 2.0 Redux: Dynamic Tool Prototyping Using Interactive Tools Salon ABCD RoomSveinung Gundersen

5:15pm CDT

BOF: microGalaxy Gallery RoomBérénice Batut
 
Monday, July 18
 

9:00am CDT

Automated Reference Genome Assembly in Galaxy in Collaboration with the Vertebrate Genome Project Salon ABCD RoomDelphine Lariviere

9:15am CDT

An Integrated Galaxy-Driven Workflow for Host-Microbiota Proteomics and Targeted Assay Development to Study Host-Microbe Dynamics in Clinical Cystic Fibrosis Samples Salon ABCD RoomTimothy J. Griffin

9:22am CDT

Advances in Machine Learning for Galaxy Salon ABCD RoomJeremy Goecks

9:44am CDT

Omicron, Delta Waves and Beyond: Galaxy-Generated Variant-Specific Peptide Panels for Diagnosis, Characterization and Surveillance of Emerging Sars-Cov-2 Variants Salon ABCD RoomSubina Mehta

10:20am CDT

17. Let the analysis be GiN: Galaxy in Notebooks Salon ABCD RoomJayadev Joshi 19. Molecular Dynamics Simulations of Viral Helicases in Galaxy Salon ABCD RoomBryan Raubenolt 23. RASCL: Rapid Assessment of selection in clades through molecular sequence analysis Salon ABCD RoomAlexander Lucaci 24. NCBI Datasets, a new resource for accessing NCBI genome data in Galaxy Salon ABCD RoomNuala O'Leary 42. Antimicrobial resistance detection with the StarAMR tool and Galaxy workflow Salon ABCD RoomAaron Petkau

11:42am CDT

Open Bio Reference Data Catalog for Galaxy and Bioconductor Salon ABCD RoomEnis Afgan
 
Tuesday, July 19
 

9:29am CDT

Galaxy in AnVIL for Education Salon ABCD RoomNatalie Kucher

9:36am CDT

To Seek Out New Talent and New Perspectives: Promoting Functional Analysis of Microbiome Through Online Educational Resources via the Galaxy Platform Salon ABCD RoomPratik Jagtap
 
Wednesday, July 20
 

9:00am CDT

Visualization of Phylogenomic Data in Galaxy with CloudForest Salon ABCD RoomReid Wagner

9:36am CDT

Targeting Viral Helicases Through Atomistic Molecular Dynamics Simulations in Galaxy Salon ABCD RoomBryan Raubenolt

1:20pm CDT

AnVIL Board Room (3rd Floor)Mike Schatz
 
Thursday, July 21
 

9:00am CDT

CollaborationFest (CoFest) Day 1 Walter LibraryDannon Baker • Assunta DeSanto • James Johnson (JJ)
 
Friday, July 22
 

9:00am CDT

CollaborationFest (CoFest) Day 2 Walter LibraryDannon Baker • Assunta DeSanto • James Johnson (JJ)
 
Saturday, July 23
 

9:00am CDT

CollaborationFest (CoFest) Day 3 Walter LibraryDannon Baker • Assunta DeSanto • James Johnson (JJ)
 
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