Loading…
GCC2022 has ended
The 2022 Galaxy Community Conference (GCC2022) brings together hundreds of researchers, trainers, tool developers, software engineers, and  computational infrastructure providers, all addressing common challenges in data intensive science using the Galaxy data integration and analysis platform.

  • July 17-23, 2022
  • University of Minnesota, Twin Cities
  • Minneapolis, Minnesota, United States

This annual gathering of the Galaxy community includes training, talks, posters, demos, Birds of a Feather meetups, and many other opportunities for collaboration and networking. GCC2022 will be an in-person meeting with limited support for remote attendees. There is no better event than GCC2022 to share your work and learn form others working in data-intensive science.

Click HERE to Register!
avatar for Helge Hecht

Helge Hecht

RECETOX
Head of Department - Spectrometric Data Processing & Analysis
Brno
Websitehttps://github.com/RECETOX/galaxytools
Sunday, July 17
 

8:45am CDT

GCC2022 Opening and Welcome Salon ABCD RoomTimothy J. Griffin • James Wilgenbusch

9:00am CDT

Session 1: GCC2022 Opening & Keynote Presentation: Open Health Natural Language Processing (OHNLP) Collaborative - An open science journey towards real-world implementation of clinical NLP Salon ABCD RoomEnis Afgan • Hongfang Liu

10:20am CDT

11. Automating Galaxy Tool Benchmarks Salon ABCD RoomKeith Suderman 14. Galaxy workflows to BioCompute Objects Salon ABCD RoomCharles [Hadley] King 41. Selenium based performance monitoring and load testing for Galaxy servers Salon ABCD RoomSimon Gladman 8. Find and share Galaxy workflows with the community using Dockstore.org Salon ABCD RoomAvani Khadilkar

11:27am CDT

Decentralized Remote Data Handling in Galaxy Salon ABCD RoomJohn Chilton

11:49am CDT

Galaxy Storage Dashboard Salon ABCD RoomDannon Baker

11:56am CDT

Galaxy History Scaling and Modernization Salon ABCD RoomAysam Guerler

12:11pm CDT

Automating Galaxy Tool Benchmarks Salon ABCD RoomKeith Suderman

1:20pm CDT

Architecture Strategy RoomJohn Chilton DRM & Clusters Salon ABCD RoomNate Coraor • Simon Gladman

4:30pm CDT

Continuous Testing Of Containerized Galaxy Tools Salon ABCD RoomAlex Ostrovsky

4:37pm CDT

The Observable Galaxy - a New Notebook Integration with Application to Regulatory Grade Database Construction Salon ABCD RoomStephen D. Shank

4:52pm CDT

Let the Analysis be GiN: Galaxy in Notebooks Salon ABCD RoomJayadev Joshi

4:59pm CDT

Galaxy ProTo 2.0 Redux: Dynamic Tool Prototyping Using Interactive Tools Salon ABCD RoomSveinung Gundersen

5:15pm CDT

BOF: IDC - Intergalactic (reference) Data Commission Strategy RoomNate Coraor • Lucille Delisle BOF: microGalaxy Gallery RoomBérénice Batut

6:30pm CDT

Opening Night Reception Courtyard
 
Monday, July 18
 

10:20am CDT

17. Let the analysis be GiN: Galaxy in Notebooks Salon ABCD RoomJayadev Joshi 19. Molecular Dynamics Simulations of Viral Helicases in Galaxy Salon ABCD RoomBryan Raubenolt 20. Multi-Species Bulk RNA sequencing on explanted hiPSC-derived engineered myocardium tissue Salon ABCD RoomKiera Dwyer 21. Secure deployment and hosting of Galaxy workflow using container orchestration tools and infrastructure as Code Salon ABCD RoomSoyean Kim 22. A Global Hub: A home on the web for every Galaxy community Salon ABCD RoomNick Stoler 26. Galaxy ProTo 2.0 Redux: Dynamic tool prototyping using Interactive Tools Salon ABCD RoomSveinung Gundersen 39. Introducing the Galaxy Mentor Network Salon ABCD RoomAssunta DeSanto

11:20am CDT

Secure Deployment and Hosting of Galaxy Workflow Using Container Orchestration Tools and Infrastructure as Code Salon ABCD RoomSoyean Kim

11:27am CDT

Scaling Galaxy on the Cloud - Data-Local Cancer Analytics on AWS Salon ABCD RoomLuke Sargent

11:42am CDT

Open Bio Reference Data Catalog for Galaxy and Bioconductor Salon ABCD RoomEnis Afgan

11:49am CDT

Gravity: Painless Process Management for Galaxy Servers Salon ABCD RoomNate Coraor

11:56am CDT

Metascheduling Galaxy Jobs with Total Perspective Vortex Salon ABCD RoomNuwan Goonasekera • Catherine Bromhead

12:11pm CDT

FragPipe in Galaxy: Wrapper Implementation for a Complete Proteomics Tool Suite Salon ABCD RoomReid Wagner

1:20pm CDT

Contributing to GTN Discovery RoomSimon Gladman

4:45pm CDT

Community Update from PIs Salon ABCD RoomBjorn Gruning • Enis Afgan • Jeremy Goecks • Mike Schatz • Anton Nekrutenko • Daniel Blankenberg

5:30pm CDT

BOF: Supporting remote workflows on distributed resources Logic RoomJon Fortney • Greg Watson • Sergey Yakubov
 
Tuesday, July 19
 

9:22am CDT

Using Galaxy as a Teaching Platform for the YES for CURE Data Science Track Salon ABCD RoomAlexandru Mahmoud

10:20am CDT

11. Automating Galaxy Tool Benchmarks Salon ABCD RoomKeith Suderman 14. Galaxy workflows to BioCompute Objects Salon ABCD RoomCharles [Hadley] King 27. Bioconductor Interactive Tools in Galaxy Salon ABCD RoomAlexandru Mahmoud 31. Galaxy History Scaling and Modernization Salon ABCD RoomDannon Baker 32. Gravity: Painless Process Management for Galaxy Servers Salon ABCD RoomNate Coraor

11:20am CDT

What's New in the API Salon ABCD RoomMarius van den Beek

11:27am CDT

Support for the Common Workflow Language in Galaxy: History, Progress and Remaining Challenges Salon ABCD RoomMichael R. Crusoe • Nicola Soranzo

11:42am CDT

Accelerating Galaxy with Task Queues Salon ABCD RoomJohn Chilton

11:49am CDT

Securely Storing Sensitive User Preferences in Galaxy Salon ABCD RoomNuwan Goonasekera

11:56am CDT

Galaxy’s New Database Migration System and Data Model Testing Infrastructure Salon ABCD RoomJohn Davis

1:20pm CDT

BioBlend Discovery RoomDannon Baker • Nicola Soranzo Pulsar & CVMFS Salon ABCD RoomSimon Gladman

4:30pm CDT

Automatic Updates of Intergalactic Workflow Commission (IWC) Workflows Salon ABCD RoomMarius van den Beek

4:37pm CDT

FragPipe in Headless Mode Enables Seamlessly Analyzing LC-Ms Data in Galaxy Platform Salon ABCD RoomFengchao Yu

4:52pm CDT

MSMetaEnhancer: A Galaxy Tool for Mass Spectra Metadata Annotation Salon ABCD RoomMatej Troják

4:59pm CDT

NCBI Datasets, a New Resource for Accessing NCBI Genome Data in Galaxy Salon ABCD RoomNuala O'Leary

5:20pm CDT

BOF: At the edge of the Galaxy, the lonely life of a (small scale) local Galaxy server admin Gallery RoomHans-Rudolf Hotz • Nicola Soranzo • Lucille Delisle BOF: Building a global database of tool resource requirements Discovery RoomEnis Afgan • Simon Gladman • Nuwan Goonasekera • Catherine Bromhead BOF: Yoga 🧘 Logic RoomAssunta DeSanto
 
Wednesday, July 20
 

9:00am CDT

Visualization of Phylogenomic Data in Galaxy with CloudForest Salon ABCD RoomReid Wagner

9:22am CDT

Processing of Small Molecule Gas Chromatography-Mass Spectrometry Data in Galaxy Salon ABCD RoomHelge Hecht

9:29am CDT

Building the Galaxy based X-Ray Imaging of Microstructures Gateway (XIMG) for High Energy X-Ray Diffraction, Imaging, and Microstructure Modeling Salon ABCD RoomKelly E Nygren

10:20am CDT

26. Galaxy ProTo 2.0 Redux: Dynamic tool prototyping using Interactive Tools Salon ABCD RoomSveinung Gundersen 33. MSMetaEnhancer: A Galaxy tool for mass spectra metadata annotation Salon ABCD RoomMatej Troják 34. Processing of small molecule gas chromatography-mass spectrometry data in Galaxy Salon ABCD RoomHelge Hecht 36. The Observable Galaxy: a new notebook integration with applications to regulatory grade database construction Salon ABCD RoomStephen D. Shank 39. Introducing the Galaxy Mentor Network Salon ABCD RoomAssunta DeSanto

1:20pm CDT

AnVIL Board Room (3rd Floor)Mike Schatz Contributing to Galaxy Core Strategy RoomJohn Davis • John Chilton Visualization Development in Galaxy Gallery RoomDannon Baker • Aysam Guerler

5:00pm CDT

BOF: Galaxy & Training / teaching Logic RoomBérénice Batut • Simon Gladman

7:30pm CDT

Aquatennial Torchlight Parade Twin Cities

9:30pm CDT

Movies in the Park at The Commons: Black Panther Twin Cities
 
Thursday, July 21
 

9:00am CDT

CollaborationFest (CoFest) Day 1 Walter LibraryDannon Baker • Assunta DeSanto • James Johnson (JJ)
 
Friday, July 22
 

9:00am CDT

CollaborationFest (CoFest) Day 2 Walter LibraryDannon Baker • Assunta DeSanto • James Johnson (JJ)
 
Saturday, July 23
 

9:00am CDT

CollaborationFest (CoFest) Day 3 Walter LibraryDannon Baker • Assunta DeSanto • James Johnson (JJ)

11:00am CDT

Twin Cities Carifest Twin Cities

6:00pm CDT

Aquatennial Fireworks and pre-fireworks festivities Twin Cities
 

My Moderators Sessions

Sunday, July 17
 

4:09pm CDT

Session 5: Accepted and Invited Talks Salon ABCD RoomHelge Hecht
 
  • Timezone
  • Filter By Date GCC2022 Jul 8 -23, 2022
  • Filter By Venue University of Minnesota - Twin Cities, Minneapolis, MN, USA
  • Filter By Type
  • A. Training
  • B. Talks
  • C. Poster / Demo
  • D. Break / Social / Meal
  • E. BoFs
  • F. Help
  • G. CoFest
  • H. Other events
  • Participation