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The 2022 Galaxy Community Conference (GCC2022) brings together hundreds of researchers, trainers, tool developers, software engineers, and  computational infrastructure providers, all addressing common challenges in data intensive science using the Galaxy data integration and analysis platform.

  • July 17-23, 2022
  • University of Minnesota, Twin Cities
  • Minneapolis, Minnesota, United States

This annual gathering of the Galaxy community includes training, talks, posters, demos, Birds of a Feather meetups, and many other opportunities for collaboration and networking. GCC2022 will be an in-person meeting with limited support for remote attendees. There is no better event than GCC2022 to share your work and learn form others working in data-intensive science.

Click HERE to Register!
avatar for Matúš Kalas

Matúš Kalas

University of Bergen
Senior Engineer
Norway
Websitehttps://orcid.org/0000-0002-1509-4981
Contact Me
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Attending GCC2022 virtually 🌌

Working on open science|source|society|education, EDAM ontology, ELIXIR Norway, Bio.tools, ...

My Friends

  • avatar for Bérénice Batut
  • avatar for Charles [Hadley] King
  • avatar for Michael R. Crusoe
  • avatar for Pratik Jagtap



Monday, July 18
 

8:59am CDT

Session 7: Accepted and Invited Talks Salon ABCD RoomKyle Ellrott

9:15am CDT

An Integrated Galaxy-Driven Workflow for Host-Microbiota Proteomics and Targeted Assay Development to Study Host-Microbe Dynamics in Clinical Cystic Fibrosis Samples Salon ABCD RoomTimothy J. Griffin

9:22am CDT

Advances in Machine Learning for Galaxy Salon ABCD RoomJeremy Goecks

9:37am CDT

"Bottom-up Against F/Re”: Comparing Bottom-up Proteomics and a Modified Edman Degradation Methodology for Automated, Untargeted Protein Adductomics Analysis Within the Galaxy Platform Salon ABCD RoomAndrew T. Rajczewski

9:44am CDT

Omicron, Delta Waves and Beyond: Galaxy-Generated Variant-Specific Peptide Panels for Diagnosis, Characterization and Surveillance of Emerging Sars-Cov-2 Variants Salon ABCD RoomSubina Mehta

10:20am CDT

24. NCBI Datasets, a new resource for accessing NCBI genome data in Galaxy Salon ABCD RoomNuala O'Leary 26. Galaxy ProTo 2.0 Redux: Dynamic tool prototyping using Interactive Tools Salon ABCD RoomSveinung Gundersen 39. Introducing the Galaxy Mentor Network Salon ABCD RoomAssunta DeSanto 43. gxtk: Tool panel in your terminal Salon ABCD RoomCatherine Bromhead

11:20am CDT

Secure Deployment and Hosting of Galaxy Workflow Using Container Orchestration Tools and Infrastructure as Code Salon ABCD RoomSoyean Kim

4:45pm CDT

Community Update from PIs Salon ABCD RoomBjorn Gruning • Enis Afgan • Jeremy Goecks • Mike Schatz • Anton Nekrutenko • Daniel Blankenberg

5:30pm CDT

BOF: Sequencing and Genomics of the Future Gallery RoomMike Schatz
 
Tuesday, July 19
 

9:00am CDT

From Newcomer to Contributor: a New Developer Experience with Galaxy Salon ABCD RoomTyler Collins • Ahmed Awan • Michelle Savage

9:07am CDT

Galaxy Australia: an Evolving Scientific Instrument Salon ABCD RoomGareth Price

9:22am CDT

Using Galaxy as a Teaching Platform for the YES for CURE Data Science Track Salon ABCD RoomAlexandru Mahmoud

9:29am CDT

Galaxy in AnVIL for Education Salon ABCD RoomNatalie Kucher

9:36am CDT

To Seek Out New Talent and New Perspectives: Promoting Functional Analysis of Microbiome Through Online Educational Resources via the Galaxy Platform Salon ABCD RoomPratik Jagtap

9:51am CDT

Galaxy-E: Ecology Oriented Galaxy Initiative, a 2022 Update! Salon ABCD RoomYvan Le Bras

10:20am CDT

11. Automating Galaxy Tool Benchmarks Salon ABCD RoomKeith Suderman 12. From Newcomer to Contributor: a New Developer Experience with Galaxy Salon ABCD RoomTyler Collins • Ahmed Awan • Michelle Savage 13. GA4GH Task Execution Schema Support in Galaxy Salon ABCD RoomKyle Ellrott 14. Galaxy workflows to BioCompute Objects Salon ABCD RoomCharles [Hadley] King 27. Bioconductor Interactive Tools in Galaxy Salon ABCD RoomAlexandru Mahmoud 30. Galaxy as a (science) gateway to the command line Salon ABCD RoomCarrie Ganote 31. Galaxy History Scaling and Modernization Salon ABCD RoomDannon Baker

11:20am CDT

What's New in the API Salon ABCD RoomMarius van den Beek

11:27am CDT

Support for the Common Workflow Language in Galaxy: History, Progress and Remaining Challenges Salon ABCD RoomMichael R. Crusoe • Nicola Soranzo

11:42am CDT

Accelerating Galaxy with Task Queues Salon ABCD RoomJohn Chilton

11:49am CDT

Securely Storing Sensitive User Preferences in Galaxy Salon ABCD RoomNuwan Goonasekera

11:56am CDT

Galaxy’s New Database Migration System and Data Model Testing Infrastructure Salon ABCD RoomJohn Davis

12:11pm CDT

Robust, Performant and Resumable Uploads Using tus.io Salon ABCD RoomMarius van den Beek

4:30pm CDT

Automatic Updates of Intergalactic Workflow Commission (IWC) Workflows Salon ABCD RoomMarius van den Beek

4:52pm CDT

MSMetaEnhancer: A Galaxy Tool for Mass Spectra Metadata Annotation Salon ABCD RoomMatej Troják

4:59pm CDT

NCBI Datasets, a New Resource for Accessing NCBI Genome Data in Galaxy Salon ABCD RoomNuala O'Leary

5:20pm CDT

BOF: Building a global database of tool resource requirements Discovery RoomEnis Afgan • Simon Gladman • Nuwan Goonasekera • Catherine Bromhead
 
Wednesday, July 20
 

9:00am CDT

Visualization of Phylogenomic Data in Galaxy with CloudForest Salon ABCD RoomReid Wagner

9:07am CDT

A Galaxy Platform for Multiplex Tissue Imaging Analysis in Cancer Research and Translation Salon ABCD RoomCameron Watson

9:22am CDT

Processing of Small Molecule Gas Chromatography-Mass Spectrometry Data in Galaxy Salon ABCD RoomHelge Hecht

9:29am CDT

Building the Galaxy based X-Ray Imaging of Microstructures Gateway (XIMG) for High Energy X-Ray Diffraction, Imaging, and Microstructure Modeling Salon ABCD RoomKelly E Nygren

9:36am CDT

Targeting Viral Helicases Through Atomistic Molecular Dynamics Simulations in Galaxy Salon ABCD RoomBryan Raubenolt

9:51am CDT

Microbial Strain Characterization and Subtyping of Metagenome-Assembled Genomes With Sequence Bloom Trees in Galaxy Salon ABCD RoomFabio Cumbo

11:19am CDT

Session 21: Keynote Presentation: Comprehensive Rib Fracture Care Map delivered as a Clinical Decision System Salon ABCD RoomSubina Mehta • Chris Tignanelli

4:09pm CDT

Session 23: GCC2022 Closing Salon ABCD RoomTimothy J. Griffin • Pratik Jagtap

5:00pm CDT

BOF: Galaxy Well-being and Mental Health Project Discovery RoomAnne Fouilloux • Beatriz Serrano-Solano • Melkeberhan Berhanu Degefa
 
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